Showing posts with label SNP. Show all posts
Showing posts with label SNP. Show all posts

Monday, March 28, 2011

Workshop on Comparative Genomics: North America, 10-23 July, 2011

The Workshop on Comparative Genomics will consist of a series of lectures, demonstrations and computer laboratories that cover various aspects of comparative genomics. The course is designed for established investigators, postdoctoral scholars, and advanced graduate students. Admission is limited and highly competitive, with admissions decisions determined by an international committee.

Topics to be covered include:
  • Sequencing technologies: short-read sequencing technologies of various types
  • Assembly and alignment: basic analyses in de novo and resequencing studies
  • Gene finding and annotation: functional description of genomic data
  • Genome characterization: gene content; genome structure; synteny; SNPs; copy number variation (CNV)
  • Assigning sequences to taxonomic groups in metagenomic studies: moving from sequences of unknown taxa to known taxa
Venue: Colorado State University, Fort Collins, Colorado, USA
Application forms and complete schedule are available online.

Thursday, March 24, 2011

cBARBEL: Catfish Breader And Researcher Bioinformatics Entry Location

cBARBEL is an online open-access database for genome biology of Ictalurus spp.. It is a comprehensive, integrative platform for all aspects of catfish genetics, genomics and related data resources. cBARBEL provides BLAST-based, fuzzy and specific search functions, visualization of catfish linkage, physical and integrated maps, a catfish EST contig viewer with SNP information overlay, and GBrowse-based organization of catfish genomic data based on sequence similarity with zebrafish chromosomes. 

cBARBEL provides links to simple daily-use informatics tools that database users may need while accessing cBARBEL, including the external NCBI BLAST server, SMART domain search, ClustalW-based multiple sequence alignments and basic nucleotide to amino acid translation. These tools are provided in-frame so that the user does not need to leave the cBARBEL site for small-scale sequence analysis. Publications relevant to catfish genomics and genetics are also linked. Additionally, the recently created Teleost Alternative Splicing Database (TASD) with alternative splicing data for catfish ESTs is linked to cBARBEL.